Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGCTGCTTCAGTACCTCGCACTGACGTAGTAGGAAAGAGTGAGTATTTCCGTTTTGGTATGAGGGATTCTCTTGCGATTGAGGCGTCTTTCTTGCAGgttcttcttcttcttctaagcttttgtggttttacgatgtatttgtatatctcgacaagttcttgcctcttggctgtttggttcaagatttgaatgaaactatcatatctgataatattttgggatatttgtgctatag

Basic information

species Arabidopsis thaliana
transcript AT1G31480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31480.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G36920.1 (Glycine max), 5'ss of exon 2
GTTAGCTGCTTCAGTACCTCGCACTGACGTAGTAGGAAAGAGTGAGTATTTCCGTTTTGGTATGAGGGATTCTCTTGCGATTGAGGCGTCTTTCTTGCAGgttcttcttcttcttctaagcttttgtggttttacgatgtatttgtatatctcgacaagttcttgcctcttggctgtttggttcaagatttgaatgaaactatcatatctgataatattttgggatatttgtgctatag
||| || || || || || |  || ||  | ||||| |||||||| ||||| |||||||| ||||| |||||||| || ||||| || ||||||||||||||  || |      |  ||     ||   | |    ||   ||| ||| ||||    | |||     | ||||    |||||  ||   ||  ||      ||  | ||   ||                         
GTTGGCAGCCTCTGTCCCGCCAACAGAGATTGTAGGCAAGAGTGACTATTTTCGTTTTGGCATGAGAGATTCTCTCGCTATTGAAGCATCTTTCTTGCAGgtcattttatgatatgaaa-----tgaaatgt----atacctttctatttctctttcatttcaa---ttttgg--acttggt--aatccttagatacccacattctttcctgtag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116452414|gb|EG495006.1|EG495006
EST:     TCCGTTTTGGTATGAGGGATTCTCTTGCGATTGAGGCGTCTTTCTTGCAG                         AGAGAAGATGAGTTGTTGTCACTCTGGTGGAAAGAGTACGCAGAATGCAGC
genomic: TCCGTTTTGGTATGAGGGATTCTCTTGCGATTGAGGCGTCTTTCTTGCAGgttcttcttc ... tgtgctatagAGAGAAGATGAGTTGTTGTCACTCTGGTGGAAAGAGTACGCAGAATGCAGC
EST: gi|116451033|gb|EG493625.1|EG493625
EST:     TCCGTTTTGGTATGAGGGATTCTCTTGCGATTGAGGCGTCTTTCTTGCAG                         AGAGAAGATGAGTTGTTGTCACTCTGGTGGAAAGAGTACGCAGAATGCAGC
genomic: TCCGTTTTGGTATGAGGGATTCTCTTGCGATTGAGGCGTCTTTCTTGCAGgttcttcttc ... tgtgctatagAGAGAAGATGAGTTGTTGTCACTCTGGTGGAAAGAGTACGCAGAATGCAGC