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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAAAAGATTACTGGGAAGAGGAGAATGCTATTGAAGAGATGCCAGCTTGTCGTCGAATGTTCAATATATTTCACCCCTATGATCCTGTTGCATATAGgttagtcttcatggaaataaaacagcttgtagctagtttatgatatcgctgtctttgttaccttcttttgcaagtgtgtaacgccaactaaacttttgtttcacgcag

Basic information

species Arabidopsis thaliana
transcript AT1G31480.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31480.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA09G36920.1 (Glycine max), 5'ss of exon 16
AGGGAAAAGATTACTGGGAAGAGGAGAATGCTATTGAAGAGATGCCAGCTTGTCGTCGAATGTTCAATATATTTCACCCCTATGATCCTGTTGCATATAGgttagtcttcatgg-aaataaaacagcttgtagctagtttatgatatcgctgtctttgttaccttcttttgcaagtgtgtaacgccaactaaacttttgtttcacgcag
  ||  |||| || |||||  |||| |||   |  || |||||||| |||||||| |  |||||||| || ||||||||||||||||| || ||||| ||||| |     ||   |  |  ||     | |  |||||   |   |     ||  |    |   |  |||  || |   | ||  ||  | |   ||||| |       
GAGGCCAAGAATATTGGGAGCAGGAAAATATAAGAGAGGAGATGCCGGCTTGTCGGCAGATGTTCAACATTTTTCACCCCTATGATCCCGTAGCATACAGgtttgctacaattctagctccaatgaagtatcactagtgattatgagtagagtaatgaacattataattt--aatttcttgacatcagttga---tttgtatagt----

upper sequence: AT1G31480.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: PP1S74_64V6.1 (Physcomitrella patens), 5'ss of exon 13
AGGGAAAAGATTACTGGGAAGAGGAGAATGCTATTGAAGAGATGCCAGCTTGTCGTCGAATGTTCAATATATTTCACCCCTATGATCCTGTTGCATATAGgttagtcttcatg--gaaataaaacagcttgtagctagtttatgatatcgctgtctttgttaccttcttttgcaagtgtgtaacgccaactaaacttttgtttcacgcag
  || |  || |||||| |||| ||      |  |||||| |||||||| || || |   |  | ||||| ||||||||||||||||| || |||||||||| ||   || ||  |  ||     |  |  ||   | | |         |||        ||| | |  |||||||||    | |   ||  ||    || | |  |||
CAGGGACGGAGTACTGGCAAGATGAAGGCATTGATGAAGAAATGCCAGCCTGCCGCCTTTTACTGAATATTTTTCACCCCTATGATCCAGTAGCATATAGgtaagcaatcttgtcgtgatgtcgaacttgataagaattctgaagagaaactgctcg----accatgtgctgcaagtgtcactcactgtctctaccc--gtatgattcag