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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGACGGTGTACGGCGTTTCCGAGAGATGCTAAGCGCAACTGTTCATGATGTGTTATACTACATGAGCCCCATTTATTGTCAGGCTATAATTGATTCGgtattgatatatcccaaattttatgctctctctgtcttcttaccaaattgaaacctattcgtgattgagtttttagattttgtgacaccagaaaaccttaatagatattgttactttaattttctgtattgttataactgataatcttgtttagtatgaaaagtgaattgtgctccattttcgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G31480.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31480.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G36920.1 (Glycine max), 5'ss of exon 8
TTTAGACGGTGTACGGCGTTTCCGAGAGATGCTAAGCGCAACTGTTCATGATGTGTTATACTACATGAGCCCCATTTATTGTCAGGCTATAATTGATTCGgtattgatatatcccaaattttatgctctctctgtcttcttaccaaattgaaacctattcgtgattgagtttttagattttgtgacaccagaaaaccttaatagatattgttactttaattttctgtattgttataactgataatcttgtttagtatgaaaagtgaattgtgctccattttcgttttgcag
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TTTGGATGGAGTGCGAGGATTACGTGTCACGCTGAGCGCAACTGTTCATGATGTGTTATACTACATGAGCCCAATTTACTGTCAAGACATAATTAACTCGgtatct------------tttttttttttttgtgtgtgtttactg--tttatgtttgttttt--ctgaatcttc---cttttaaaatttatcagatctaggtgaatttcttccttttaa------------------------------------------------------------------------