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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGgtaaggagttatgtttccatcacaaaaaaaaaaagacactgcatgtctgtgcattggataggagttcatttttcatcctcaaaaaatagacactgcatgt...

Basic information

species Oryza sativa
transcript LOC_Os02g17500.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G412899_T04 (Zea mays), 5'ss of exon 12
TTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGgtaaggagttatgtttccatcacaaaaaaaaaaagacactgcatgt---ctgtgcattggataggagttcatttttcatcctcaaaaaat-agacactgcatgt----
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TTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTGCCTGAGATTTTCCCTAATAAAATCCGAGCTAAGGCTATGGCTCTCTGCATGTCTGTACATTGGgtaagaa-------ctccatgagccaggatatcaggcac-gcatgtgaattgttagatggaaaagaataagcataccagtatggaagaattatacattatattatata