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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGCTTCCTTCAACTACTCTCAGAACTGGGGGAAGTATTCTGCTCAAAACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaattgaaaaactttaattccctattcttcaattttctttaaagaagtttactgtttcatctattaaagcaaacactctgatacttacttgcatgttatttgatcag

Basic information

species Glycine max
transcript GLYMA08G20060.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330913|gb|GR842178.1|GR842178
EST:     AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG                         GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: gi|7638952|gb|AW733217.1|AW733217
EST:     AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG                         GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: gi|22523500|gb|BU082311.1|BU082311
EST:     AACAACTGGCAGTCCGATGGGCTTTTCTCCTGATAGTGCAAATGCTAAAG                         GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: gi|192312323|gb|FK005327.1|FK005327
EST:     AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG                         GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: gi|192312324|gb|FK005328.1|FK005328
EST:     AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG                         GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: gi|6482444|gb|AW201703.1|AW201703
EST:     AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG                         GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC