Sequence
atgc intronic sequence ATGC exonic sequenceGTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGgttagtttttttactttctctgttttggttcctgagctgtattttatcttgagtctgaatatgatcatttgacttgcttgtgttattttaggaaaaacta...
Basic information
species | Glycine max |
transcript | GLYMA12G09060.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 7
GTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGgttagt-ttttttactttctctgttttggttcctgagct---gtattttatcttgagtctgaatatgatcatttgacttgcttgtgttattttaggaaaaacta-----------------------
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GTTTAGGTTTCCTTACCCCTTGCAATGGGGTGTACCGTTATTCAACTGGAAAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGgttagtgtttcctatcatctttgattaaaccatcaaaattatgtgttggaagtcaaacttttgcacttttact-aatcagtttacggtacggtatgcatatatggtaattttttattttactgtcag
upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 7
GTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGgttagtttttttactttctctgt-tttggttcctgagctgtattttatcttgagtctgaatatgatcatttgacttgcttgt-gttattt-taggaaaaacta-
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GTTTAGGTTTCCTTATCCATTACAATGGGGTACACCTGTCTTCCACTGGAAAATGGCCATTGTCATGTGTGTGGTTTCTGTAATCTCATCAGTGGACTCAgtaagtttgcttccatttgttatatttaatctcttgaatgt-tcatatctta---tttgatttactgaaatgagttacaaattattagatatttgaaaggttgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20075721|gb|BQ094504.1|BQ094504EST: AAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCG GTTGGCTCATACCATGCATCTTCATTACTGGTAGCATCCAGACCGCCAACT
genomic: AAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGgttagttttt ... ctttttgtagGTTGGCTCATACCATGCATCTTCATTACTGGTAGCATCCAGACCGCCAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGgttagtttttttactttctctgttttggttcctgagctgtattttatcttgagtctgaatatgatcatttgacttgcttgtgttattttaggaaaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaac