1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATGACATCAAATTTGGAGTGGATAACAAAGTTGACTTCTATGCTGTTTCTTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaatattcaagatacttgtattttttttaattagtccatctgattaatttctctaattatttcaaaatgtgataaattgtccactcaacgctgcag
species | Glycine max |
transcript | GLYMA20G30430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAA GCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTAEST: gi|26048943|gb|CA785396.1|CA785396
genomic: TTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaatattc ... aacgctgcagGCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTA
EST: TTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAA GCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTAEST: gi|26048715|gb|CA785168.1|CA785168
genomic: TTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaatattc ... aacgctgcagGCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTA
EST: GTTCATGAACTGAAGAATTATTTGAAAA GCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTA
genomic: GTTCATGAACTGAAGAATTATTTGAAAAgtaaatattc ... aacgctgcagGCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGTGCAGACTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGACATCAAATTTGGAGTGGATAACAAAGTTGACTTCTATGCTGTTTCTTTTGTTAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaatattcaagatacttgtattttttttaattagtccatctgattaatttctctaattatttcaaaatgtgataaattgtccactcaacgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA