Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgtatgatgagggcttccctataattcaataaattatacatcagattagttaaacaagaaaaacctttcacctatgtgcttgactgtgccattatttcaaa...
Basic information
species | Glycine max |
transcript | GLYMA20G32030.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G17530.3 (Arabidopsis thaliana), 5'ss of exon 13
GTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgtatgatgagggcttccctataattcaataaattatacatcagattagttaaacaagaaaaacctttcacctatgtgcttgactgtgccattatttcaaa------
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GCGGAAAGCATCACAGGTTCAAAAGAGGTTACAAGAATGTCATTGACGAAGCTATTCGCTTGgta--ataaatgat--cgtatctttcgagaactcatgcttcggagccaattgttgttagctatctta-agttgtgt-tagaattgatacagtatctaaaagtgttg
upper sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 13
GTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgtatgatgagggcttccctataattcaat---aaattatacatcagattagttaaacaa--gaaaaacctttcacctatgtgcttgactgtgccattatttcaaa
| || | ||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||||| ||| || | | || | | | | | | || | ||| | || || | | ||||| | || | | |
GAGGAAAGCACCACCGGTTCAAAAGGGGCTATAAAAATGTCATTGATGAAGCTATTCGCTTGgtaagatttaattttacatgatttttggtttaagaatgtgagttttatgaattaccgtactgaggaagtaactaaggaaactcttgaatctg--agtgctca---
upper sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ15375 (Selaginella moellendorffii), 5'ss of exon 11
GTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgtatgatgagggcttccctataattcaataaattatacatcagattagttaaacaagaaaaacctttcacctatgtgcttgactgtgccattatttcaaa
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GGGGAAAGCATCACCGGTTCAAGAGAGGATACAAAAATGTGATTGATGAAGGCATACGCTTGgta-----atgacacagtcatgtcacacaaactt-----tcagctcaactaa-cgcaaaatggttgtag-------------------------------
upper sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ24972 (Selaginella moellendorffii), 5'ss of exon 11
GTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgta-tgatgagggcttccc-tataattcaataaatta--tacatcagattagttaaacaagaaaaacctttcacctatgtgcttgactgtgccattatttcaaa
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GGGGAAAGCATCACCGGTTCAAGAGAGGATACAAAAATGTGATTGATGAAGGCATACGCTTGgtaatgacaaagtcatgtcacacaaactttcagctcaactaacgcaaaatggttgtag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298163368|gb|HO012101.1|HO012101EST: GGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTG AATTCTATTGGTGAGGAGTCACATTTGGCAATTGAAACTAGTGGACATGGA
genomic: GGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgtatgatgag ... ttgctgacagAATTCTATTGGTGAGGAGTCACATTTGGCAATTGAAACTAGTGGACATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGgtatgatgagggcttccctataattcaataaattatacatcagattagttaaacaagaaaaacctttcacctatgtgcttgactgtgccattatttcaaa
- - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa