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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCAGCGGCAGCCTGAACGCCATGGCCATGTTCGAGGCCTACTACAAGGACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggccgggtgcgaggaggaggaggaggaaggtgttaagaaggggtatgacaatctgaccttggttgcgctgggttgaggatggagagagcagag...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06519
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10780184|gb|AV636864.1|AV636864
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGNGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|14228778|gb|BG847594.1|BG847594
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|161816214|gb|FC102102.1|FC102102
EST:     GATGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|49460700|gb|BP088613.1|BP088613
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|161810403|gb|FC096075.1|FC096075
EST:     GATGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|22065678|gb|BQ816494.1|BQ816494
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTNCGG-TGTGTTGAACGACCTGNGCAG
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGT-CGGGTGTGTTGAACGACCTGGGCAG
EST: gi|15368215|gb|BI527641.1|BI527641
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|16437977|gb|BM003197.1|BM003197
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAG
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAG
EST: gi|161799775|gb|FC083242.1|FC083242
EST:     GATGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|23360435|gb|BU648255.1|BU648255
EST:     GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT
EST: gi|161812642|gb|FC094779.1|FC094779
EST:     GATGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAG                         GTCGGGTGTGTTGAACGACCTGNGCAGCGGCAGCAACGTGGACCTGTGCGT
genomic: GACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggc ... gcgcacacagGTCGGGTGTGTTGAACGACCTGGGCAGCGGCAGCAACGTGGACCTGTGCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGCAGCGGCAGCCTGAACGCCATGGCCATGTTCGAGGCCTACTACAAGGACGACATGAACCGCGCGGAGGCCATGGAGCTGGTGGCCAAGGGCATCAGgtgcgggggccgggtgcgaggaggaggaggaggaaggtgttaagaaggggtatgacaatctgaccttggttgcgctgggttgaggatggagagagcagag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaggat