1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtataattttatcaaccaccatcagcatgatgcctatttcatattcctgaagtgttaaagtggtatttctttgggttttccacttttcaatcattcaaacaagtgcttgaacatcctctttgttaattgcgtttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACGTGCTGGTGGACAGCAATTCATTGCGGTCACCAGTGAAGGATATTATTAA
species | Zea mays |
transcript | GRMZM2G033828_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGGTGGCCTGCCACCTCTTCCCCTT-TAGAAACAGGAGCGTTTGCAAG ACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACGEST: gi|67026333|gb|CO455082.1|CO455082
genomic: GGGTGGCCTGCCACCTCTT-CCCTTCCAGAAACAGGAGCGTTTGCAAGgtataatttt ... tttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
EST: ATTGGGTGGCCTGCCACCTCTTCCTTTCCAGAAACAGGAGCGTTTGCAAG ACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACGEST: gi|29167908|gb|CB411168.1|CB411168
genomic: ATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAGgtataatttt ... tttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
EST: ATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAG ACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
genomic: ATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAGgtataatttt ... tttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
tcaatcattcaaacaagtgcttgaacatcctctttgttaattgcgtttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACGTGCTGGTGGACAGCAATTCATTGCGGTCACCAGTGAAGGATATTATTAA
tgttaat putative branch site (score: 3)
cgtttcct putative PPT
tttgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataattttatcaaccaccatcagcatgatgcctatttcatattcctgaagtgttaaagtggtatttctttgggttttccacttttcaatcattcaaacaagtgcttgaacatcctctttgttaattgcgtttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACGTGCTGGTGGACAGCAATTCATTGCGGTCACCAGTGAAGGATATTATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA