Sequence
atgc intronic sequence ATGC exonic sequence...ggttactcttggtgtttgtgtttcctggtgctttatgaatttcttgttttttagtttgcttgtactctttcttaatcatctttgctatttgtgattgcagAATCTGCTCAAGTCTGGTGGAAGCAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G442324_T01 (Zea mays), 3'ss of exon 7
ggttactcttggtgtttgtgtttcctggtgctttatgaatttcttgtttttt--agtttgcttgtactctttcttaatcatctttgctatttgtgattgcagAATCTGCTCAAGTCTGGTGGAAGCAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGA------
| ||| | | | | || | | | | ||| || ||| ||| ||| | | | | | ||||| |||||| |||||| || | | | || ||||| ||||| ||||| || ||| |||| ||||||||||||||||| || ||||||||||| ||||
-ttcactttaaccaagcttaagtacaggcttacaaaaatgcttctatttcttgtgaattgtttgcctgcttcgcttacaagatgcac-atttggttttgcagGGCTTGCTCA------GTAGGAATCATCACTACGGAAAGACATCTTTTGTGGAACATAGGACTTTTCTTCATCTTTACCACAGCTTTCATCGCCTTTGGATGTTCC
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G44150.1 (Glycine max), 3'ss of exon 12
ggttactcttggtgtttgtgtttcctggtgctt-tatgaatttcttgttttttagtttgcttgtactctttcttaatcatctttgctatttgtgattgcagAATCTGCTCAAGTCTGGTGGAAGCAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGA
| | | ||| | || ||| | | | | |||| || | | ||| ||| | || | | || | | || |||||| |||| | |||| | || | ||| ||||||||||| |||||||||||||| || ||| |||||||||| ||||| || || || ||||||
ctctgaagataacttaaatgtatgacagtatgagtatccacatatgatattttctttggtcgatgtccttggttacttatttatcctttgtacaat-gcagAAAATGCTTATACCTGGCAGCAGTAGGCATCAGGGAAAAACATCTTTTGTTGAGCATCGAACTTTTTTTCATCTTTATCATAGCTTCCACCGATTGTGGA
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 3'ss of exon 12
ggttac-tcttggtgtttgtgtttcctggtgctttatgaatttcttgttttttagtttgcttgtactctttcttaatcatctttgctatttgtgattgcagAATCTGCTCAAGTCTGGTGGAAGCAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGA------
||||| || | ||| | | | | ||| || | | || | | | |||| | || | || | | | || || ||||| || |||||| | || | |||||| |||||||||| || ||||||||||| ||||| ||| | ||||| ||||| ||||| ||||| | ||||
ggttagatccttttgtgtttagtataaaat-cttgatacagacttcaattctca---taggtgtatctgatgttgaatatactggtttttcgt---tgcagtatgagCTCAAAACCGGCAGGGCAAAACATCGAGGAAAAACTTCCTTTGTTGAGCACCGGACATTTTTGCATCTGTACCACAGTTTCCATCGGTTATGGATATTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttttagtttgcttgtactctttcttaatcatctttgctatttgtgattgcagAATCTGCTCAAGTCTGGTGGAAGCAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGA
tcttaat putative branch site (score: 3)
tttcttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttactcttggtgtttgtgtttcctggtgctttatgaatttcttgttttttagtttgcttgtactctttcttaatcatctttgctatttgtgattgcagAATCTGCTCAAGTCTGGTGGAAGCAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGA
- - - -cttggtg
- - - - - - - - - - -ttcctgg