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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggatttcttccgtggtttcattgtttcctctctgaattgtttctatctttttttgtgcctctttcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ22693
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169087197|gb|FE496225.1|FE496225
EST:     CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
EST: gi|169037659|gb|FE444736.1|FE444736
EST:     GTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: GTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
EST: gi|169041480|gb|FE449519.1|FE449519
EST:     CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
EST: gi|169059864|gb|FE467863.1|FE467863
EST:     CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtttcctctctgaattgtttctatctttttttgtgcctctttcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAG
                  ttgtttctatcttttt  CT-rich tract
                     tttctatcttttttt  TA-rich tract