1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agggtgccttagtgtagagttgtgtcgtgagaatgagcaggtatttgatgattcatgttgcgtatgaagcagttgtttatggttgaatttggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGGTTCTTCAAGCCCTGAAAGACGCAGGATTTGAG
species | Physcomitrella patens |
transcript | PP1S505_6V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|67727357|gb|BJ977616.1|BJ977616
genomic: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: TCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|208367883|gb|DC955346.1|DC955346
genomic: TCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|208387195|gb|DC945494.1|DC945494
genomic: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|208396976|gb|DC924658.1|DC924658
genomic: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: CTGACGCGTATAATCC-NGAAACAAGGATCACAAACGCATCCAG GAAGAGATTGAACTCGGAAATGGT-TTCCTGACATTCGGTCCACACGTCAGEST: gi|162166440|gb|FC342422.1|FC342422
genomic: CTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|208380622|gb|DC919380.1|DC919380
genomic: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: GATCACCAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|208371896|gb|DC951714.1|DC951714
genomic: GATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: ATCCTGGAACCANGGNTCNCCAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|208354679|gb|DC918705.1|DC918705
genomic: ATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGEST: gi|67720489|gb|BJ970748.1|BJ970748
genomic: GCATAACTGACGCGTATAATCCTGGAAACAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
EST: CAAGGATCACAAACGCATCAAG GAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
genomic: CAAGGATCACAAACGCATCAAGgtattatcct ... ggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAG
tgatgattcatgttgcgtatgaagcagttgtttatggttgaatttggttgcgcagGAAGAGATTGAACTCGGAAATGGTCTTCCTGACATTCGGTCCACACGTCAGGTTCTTCAAGCCCTGAAAGACGCAGGATTTGAG
atttgat putative branch site (score: 5)
ttgtttat TA-rich tract