1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgattatatttttgcaaacagtagcaaaagtgatttaagcaaaccttaaagaatagttttattaagttacacagacttatgataaactattttatggttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGAATAGTGATGCTGCCATGTAGTAATTTTCCCCTGTATTAC
species | Glycine max |
transcript | GLYMA12G09000.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAA GCCTTTCACCAACGAAGCTGGTCTGCAACAEST: gi|14999862|gb|BI320676.1|BI320676
genomic: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAgtatgattat ... gttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACA
EST: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAA GTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGEST: gi|254343635|gb|GR857391.1|GR857391
genomic: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAgtatgattat ... gttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGG
EST: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAA GTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGEST: gi|192294172|gb|FG986261.1|FG986261
genomic: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAgtatgattat ... gttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGG
EST: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAA GTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAAGCTAAGCATGG
genomic: GGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAgtatgattat ... gttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGG
aatagttttattaagttacacagacttatgataaactattttatggttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGAATAGTGATGCTGCCATGTAGTAATTTTCCCCTGTATTAC
ttttact CT-rich tract
acttatgataaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattatatttttgcaaacagtagcaaaagtgatttaagcaaaccttaaagaatagttttattaagttacacagacttatgataaactattttatggttttactagGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGAATAGTGATGCTGCCATGTAGTAATTTTCCCCTGTATTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC