1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatggtccttttaaacagaaatgagattaatggtaaagataagtattagttggtattacttccataactggatatcaatttgagttctttttaagatcacaatgcctgctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAACAAATATGCTGGAAAGCATGATTGTTCACCCGACACCAACCAGAGCCG
species | Glycine max |
transcript | GLYMA20G30430.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAEST: gi|26048943|gb|CA785396.1|CA785396
genomic: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAGgtatggtcct ... gctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCA
EST: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAEST: gi|26048715|gb|CA785168.1|CA785168
genomic: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAGgtatggtcct ... gctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCA
EST: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAEST: gi|192328427|gb|FK020715.1|FK020715
genomic: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAGgtatggtcct ... gctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCA
EST: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCA
genomic: GAGGAGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTTTGCAGgtatggtcct ... gctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCA
cataactggatatcaatttgagttctttttaagatcacaatgcctgctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAACAAATATGCTGGAAAGCATGATTGTTCACCCGACACCAACCAGAGCCG
ccataac putative branch site (score: 3)
atatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtccttttaaacagaaatgagattaatggtaaagataagtattagttggtattacttccataactggatatcaatttgagttctttttaagatcacaatgcctgctagtgtagGAAGAAATAATCACCATATGTCGTAGCATGGGAAAGGCCGTTATTGTGGCAACAAATATGCTGGAAAGCATGATTGTTCACCCGACACCAACCAGAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA