1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgaaattgcggtggtattatgtattgttatgtttggtcacataggtaatgtcttcaattatgattgatgagtggtgagcaaacttcaccagctcttatatgcaactttattttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG
species | Glycine max |
transcript | GLYMA12G09000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATAGTGAAGAGGAGAGTGGTGGAGATGATGAAGAGACCCCTGCTAAGAAG GTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTEST: gi|254343635|gb|GR857391.1|GR857391
genomic: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGgtaatgaaat ... ttttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATT
EST: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAG GTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTEST: gi|192294172|gb|FG986261.1|FG986261
genomic: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGgtaatgaaat ... ttttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATT
EST: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAG GTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTEST: gi|254343634|gb|GR857390.1|GR857390
genomic: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGgtaatgaaat ... ttttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATT
EST: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAG GTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATT
genomic: ATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGgtaatgaaat ... ttttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATT
tgatgagtggtgagcaaacttcaccagctcttatatgcaactttattttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG
gattgat putative branch site (score: 4)
ctttatttt putative PPT
aactttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaaattgcggtggtattatgtattgttatgtttggtcacataggtaatgtcttcaattatgattgatgagtggtgagcaaacttcaccagctcttatatgcaactttattttgtgaagGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA