1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...caatgagacccttctgcaaatttctgacctgcaacgattggtttgcagtttctgtttctatattataatttattacttgctcaatctaatcttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG
species | Glycine max |
transcript | GLYMA20G32030.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATEST: gi|22931555|gb|BU548694.1|BU548694
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATEST: gi|6341955|gb|AW164779.1|AW164779
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATEST: gi|193326860|gb|FK290739.1|FK290739
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
EST: CCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATEST: gi|58020778|gb|CX707520.1|CX707520
genomic: CCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATEST: gi|51344295|gb|CO985028.1|CO985028
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATEST: gi|208319741|gb|GE116814.1|GE116814
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGEST: gi|298163368|gb|HO012101.1|HO012101
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGG
EST: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
genomic: CAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGgtatgtttgt ... cttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCAT
cagtttctgtttctatattataatttattacttgctcaatctaatcttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG
atctaat putative branch site (score: 3)
tcttc CT-rich tract
tctgtttctatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgagacccttctgcaaatttctgacctgcaacgattggtttgcagtttctgtttctatattataatttattacttgctcaatctaatcttcaaccagGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG
caatgag
- - - - cccttct
- - - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacttgc