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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccagtgtgtaaatgttctcggtttgcatgcatccatacattaatgtcatgaattcactgacatatcagagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG

Basic information

species Glycine max
transcript GLYMA20G32030.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 15
gtaagccagtgtgtaaatgttctcggtttgcatgcatccatacattaatgtcatg---aattcactgacatatcagagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG
        || ||  | | | ||   |||   || |   ||| |||| | ||||    | |||||| | |  | ||||||| ||||||||| || ||||||||||| || ||||||||||  |||||||| |  | ||  || ||||| |  || || || || || || ||||||||||| 
--------gtatgcca-tttgctgtattttgttgtactaatatattattttcattgttatttcactcataatttagagcttccagATCTTTCCGAGAATATGGAGAGGCAGTGCTGAAACTCTTGGAGAATTTGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931555|gb|BU548694.1|BU548694
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|6341955|gb|AW164779.1|AW164779
EST:     CAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: CAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|58020778|gb|CX707520.1|CX707520
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|51344295|gb|CO985028.1|CO985028
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|208319741|gb|GE116814.1|GE116814
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|298163368|gb|HO012101.1|HO012101
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgcatccatacattaatgtcatgaattcactgacatatcagagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGG
                                cactgac  putative branch site (score: 2)
                                                ctttc  putative PPT
            atacattaat  TA-rich tract