Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatgcctgcgatgaatgctgagggatgaagtgtataatgtggcaaggaaacgtgttttctcattatctcatgtgtatctggttttttgggtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATAAGCAACTTGCTGAAGTTGTTGGAGGATGCCCTGGGCAATACTATAG

Basic information

species Glycine max
transcript GLYMA19G36680.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7232984|gb|AW568335.1|AW568335
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|4396621|gb|AI495618.1|AI495618
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|151394863|gb|EV264734.1|EV264734
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298177419|gb|HO023552.1|HO023552
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|209727236|gb|BW655247.1|BW655247
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298171306|gb|HO016338.1|HO016338
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTACA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|151397327|gb|EV267200.1|EV267200
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192300429|gb|FG991471.1|FG991471
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192332843|gb|FK026844.1|FK026844
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192325592|gb|FK019448.1|FK019448
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298191793|gb|HO035875.1|HO035875
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|192332844|gb|FK026845.1|FK026845
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|151408235|gb|EV278043.1|EV278043
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298166913|gb|HO010352.1|HO010352
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|6915285|gb|AW396815.1|AW396815
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|298180406|gb|HO021959.1|HO021959
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
EST: gi|4313839|gb|AI460958.1|AI460958
EST:     GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCG                         AGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA
genomic: GCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGgtactaccca ... gtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaaacgtgttttctcattatctcatgtgtatctggttttttgggtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATAAGCAACTTGCTGAAGTTGTTGGAGGATGCCCTGGGCAATACTATAG
                                     tttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatgcctgcgatgaatgctgagggatgaagtgtataatgtggcaaggaaacgtgttttctcattatctcatgtgtatctggttttttgggtttgaacagAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATAAGCAACTTGCTGAAGTTGTTGGAGGATGCCCTGGGCAATACTATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
-catgcct
- - - - - - -gaatgct
- - - - - - - - - - - - - tgaagtg
- - - - - - - - - - - - - - - - - - -atgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtt