1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttctctctctctcactttcactctcttatcgcattcgaatcttctcactagaaacttgtaatttgacaagaaagattttttgatgtggcagGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTTCTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACT
species | Arabidopsis thaliana |
transcript | AT4G24940.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGGAATATTAGCACAG GAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTEST: gi|86078264|gb|DR374021.1|DR374021
genomic: CTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGGAATATTAGCACAGgttctctctc ... gatgtggcagGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGT
EST: CTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGGAATATTAGCACAG GAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTTCTTC
genomic: CTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGGAATATTAGCACAGgttctctctc ... gatgtggcagGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTTCTTC
gaatcttctcactagaaacttgtaatttgacaagaaagattttttgatgtggcagGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTTCTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACT
ttttttg CT-rich tract
aagaaagatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctctctctctcactttcactctcttatcgcattcgaatcttctcactagaaacttgtaatttgacaagaaagattttttgatgtggcagGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTTCTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA