1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggtccgtctagttcctccgtttcagaaaaactgtactgaattttgtaaagtcggttagtgttaggcttctaatcaacacataaaaattggggttgttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGTGGTGGTTATTACATCATCCATTCTTTTCTTCA
species | Arabidopsis thaliana |
transcript | AT3G01550.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATRGCTMCCAACAG GTAYCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGEST: gi|125211808|gb|EL226762.1|EL226762
genomic: TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgt ... gttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
EST: CTTGCTGGTGTTTGCTTGCATAGCTACCAACAG GTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGEST: gi|47828631|gb|CK118315.1|CK118315
genomic: CTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgt ... gttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
EST: TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAG GTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
genomic: TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgt ... gttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
gtcggttagtgttaggcttctaatcaacacataaaaattggggttgttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGTGGTGGTTATTACATCATCCATTCTTTTCTTCA
ttctaat putative branch site (score: 2)
aacacataaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtccgtctagttcctccgtttcagaaaaactgtactgaattttgtaaagtcggttagtgttaggcttctaatcaacacataaaaattggggttgttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGTGGTGGTTATTACATCATCCATTCTTTTCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG