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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttttaaacctctttttcttttgctctttgtggggaacgatttcgttggatttgagtttctggtatattgtcagGTAACAGTGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G63960.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA06G16110.2 (Glycine max), 3'ss of exon 2
------------gtgagtgtttttaaacctctttttcttttgctctttgtggggaac------gatttcgttggatttgagtttctggtatatt-gtcagGTAACAGTGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAG
             | | |||  |||    | |  ||||   |       ||  |  |      |   |  |   ||     | | | || | || ||||||  ||||||| ||||||  ||||||||| ||||| ||||| || ||||||  |||||||||||||||||| ||||| ||||| ||  |||| ||||| | 
ttatatatgattatcattgtacttatgattatggttctcaagtcaaccatgcagtgccttacaggaattatataataaacatattttgtttgtttgtcagGACACAGTGTTTGTTGCAATGTTCATGGGTTTGAACCATATTTCTACATTTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAAC

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA04G38800.1 (Glycine max), 3'ss of exon 2
-------------gtgagtgtttttaaacctctttttcttttgctctttgtggggaacgatt------tcgttggatttgagtttctggtatattgtcagGTAACAGTGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAG
             ||   |||  |||    | |  ||||   |       ||  |  |  |       |  |   ||     | | || |   ||||||||  ||||||| ||||||  ||||||||| ||||| ||||| || |||||   |||||||||||||||||| ||||| ||||| ||  |||| ||||| | 
tatgattatcattgtacttgtacttatgattatggttctcaagtcaaccatgcagtgccttataagaattatataataaacatatttgtttgtttgtcagGACACAGTGTTTGTTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctctttgtggggaacgatttcgttggatttgagtttctggtatattgtcagGTAACAGTGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAG
                                            tatattgt  TA-rich tract