1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTGAGTCTCATAGGAGAGCTGCTGCAGCCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatggattgaaactcttctcccccctccccccacttctttcaagtagaaactagcaaccactttagttaaagtagtttgtaactatgtcaacttat...
species | Zea mays |
transcript | GRMZM5G848768_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGATCGTCCCGGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|6994094|gb|AW453308.1|AW453308
genomic: GAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCGGTGCCAACCAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAEST: gi|91874450|gb|EB404407.1|EB404407
genomic: CACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAA-CAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGA
EST: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|213184067|gb|FM191388.1|FM191388
genomic: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCTGGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|74238395|gb|DT646309.1|DT646309
genomic: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CCCCGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|33942354|gb|CF348954.1|CF348954
genomic: CCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: GGAAAATTCAAGGATGAGATCGTCCCGGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|60672291|gb|DN475055.1|DN475055
genomic: GGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCGGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|148952059|gb|EC897848.2|EC897848
genomic: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|32859848|gb|CD999529.1|CD999529
genomic: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCGGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGATEST: gi|6012216|gb|AW061758.1|AW061758
genomic: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
EST: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCGGTGCCAACAAAG ATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
genomic: CCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatgga ... tattctgcagATCGTTGATCCTAAAACTGGAGAGGAGAAGGAAGTTGTGATATCAGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGTCTCATAGGAGAGCTGCTGCAGCCACGGCCTCTGGAAAATTCAAGGATGAGATCGTCCCCGTGCCAACAAAGgtaagatggattgaaactcttctcccccctccccccacttctttcaagtagaaactagcaaccactttagttaaagtagtttgtaactatgtcaacttat
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC