Sequence
atgc intronic sequence ATGC exonic sequenceCCAGCTGACATCGGTGACATCGTCGTTGGGACGGTGCTTGGCCCTGGTTCCCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTGgtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G848768_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGCTGACATCGGTGACATCGTCGTTGGGACGGTGCTTGGCCCTGGTTCCCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTGgtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcag
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CCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGGCACCTGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgta---------tgtttctt----ctatgtacagtac--aatacaatggtgaaaagtctttgtttttatttcctgta-------------tgct-catcctgttatgttcat----ttgcag
upper sequence: GRMZM5G848768_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ35624 (Selaginella moellendorffii), 5'ss of exon 4
CCAGCTGACATCGGTGACATCGTCGTTGGGACGGTGCTTGGCCCTGGTTCCCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTGgtaactgataactgtt-gtttacgatcatgcatgctac-ctaatatgaagaagacga--tcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcag
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CCTGCTGAGGTTGGCGACATTGTTGTGGGAACCGTGCTTGCTCCTGGTTCTCAGCGTGCAAATGAGTGCCGGATGGCAGCATTCTATGCTGGATTTCCAGgtttatgatttttctttgttttctatataacttgtttttctttcaccattgagactaacttttatgtcttggtag---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148952059|gb|EC897848.2|EC897848EST: CCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTG AAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGG
genomic: CCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTGgtaactgata ... gttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGCTGACATCGGTGACATCGTCGTTGGGACGGTGCTTGGCCCTGGTTCCCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTGgtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA