Sequence
atgc intronic sequence ATGC exonic sequencegtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 3'ss of exon 4
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
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----gtaata-ctgt-gtttgcggttatat----cacc--atatgaagacagggcttctttatt---atggacact-------ggtttcatt-tgcttgattttacttttctgtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGCAGTGGCTGATGTTGCCGCGGCCATTAAAGCTGGGTTCTACGACATAG
upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G18980.1 (Glycine max), 3'ss of exon 4
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcat-cccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
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----------------------------gtatgtt---tagaatttagata--gattgtgcttctgaacctgatatatgatctgggtttgttatttatacttgtgatgttattttcatc-cagAAACTGTGCCTGTTAGGACTGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTTGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
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----------------------------gtatg-tctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacat---gtgatgttattttcatc-cagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
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-------------gtatgtttcttctatgtacagtac--aatacaatggtgaaaagtctttgtttttatttcctgta-------------tgct-catcctgttatgttcat----ttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATTAAAGCGGGATTTTATGACATTG
upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaactgataactgttgtttacgatcatgcatgctacc-taatatgaagaagacga-tcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
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-----------------------gtaatattttcttctgtattatggtaatcctgaatcttttcttctttttcgtttg------ttgtatgcttatgctctttttgt-----ctgttg--gaagAAACTGTTCCCATCAGAACCGTGAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGCTGGTTTTTATGACATTG
upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgt-tgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
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----------------------------gtatatttcct----tgaa-----ctatcctttatatttttggtttt-----gtacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148952059|gb|EC897848.2|EC897848EST: CCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTG AAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGG
genomic: CCAGCGTGCAAACGAGTGCAGGATGGCTGCGTTGTTTGCTGGATTCCCTGgtaactgata ... gttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
aaaaaaagaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT