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gttgcccaatctgccctatcttgattagtccacgttgtgtttgtcgtcgatgttcagacacattttgctcaattccttgttacatttaacgctgcttggtatcgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCCGTGGCCATTCCTGCTGCTGTGAAGTCTGCAGGCCTTGAGATTGGAGAC
species | Zea mays |
transcript | GRMZM5G848768_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|60346439|gb|DN213412.1|DN213412
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|32868231|gb|CF007913.1|CF007913
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|6994094|gb|AW453308.1|AW453308
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|7031294|gb|AW461032.1|AW461032
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|149076676|gb|EE165319.2|EE165319
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|91874450|gb|EB404407.1|EB404407
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|213184067|gb|FM191388.1|FM191388
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|211292683|gb|FL176851.1|FL176851
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|74238395|gb|DT646309.1|DT646309
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|33942354|gb|CF348954.1|CF348954
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCCTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|148946680|gb|EC891943.2|EC891943
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|149100616|gb|EE186704.2|EE186704
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|32859198|gb|CD998879.1|CD998879
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|60672291|gb|DN475055.1|DN475055
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAA-GATCTGTGGCTCTGAA-AAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAEST: gi|78074202|gb|DV502636.1|DV502636
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGA
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|88752432|gb|DY536573.1|DY536573
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|211323452|gb|FL157684.1|FL157684
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGTGTTGGTCCTGCEST: gi|32859848|gb|CD999529.1|CD999529
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTNTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGT-ATGGGTGTTGGTCCTGCEST: gi|149101630|gb|EE187762.2|EE187762
genomic: AAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCT-TGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|101388206|gb|EB816117.1|EB816117
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|60345789|gb|DN212762.1|DN212762
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCEST: gi|101394624|gb|EB819247.1|EB819247
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
EST: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG GAGCTTGGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
genomic: AAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaat ... cgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGC
acacattttgctcaattccttgttacatttaacgctgcttggtatcgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCCGTGGCCATTCCTGCTGCTGTGAAGTCTGCAGGCCTTGAGATTGGAGAC
atttaac putative branch site (score: 3)
ttacatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcccaatctgccctatcttgattagtccacgttgtgtttgtcgtcgatgttcagacacattttgctcaattccttgttacatttaacgctgcttggtatcgtctattagGAGCTTTGCGGCTGTTGGAGTGGATCCAGCTGTTATGGGCGTTGGTCCTGCCGTGGCCATTCCTGCTGCTGTGAAGTCTGCAGGCCTTGAGATTGGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA