1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTGGCAGTATTTGCATCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctggataaccttccctttcacagaatggaaacccgggagattcaatttggttttgtttcaacgcag
species | Zea mays |
transcript | GRMZM5G840928_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCATGGGCCCGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|76016157|gb|DT943327.1|DT943327
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|211044162|gb|FL460073.1|FL460073
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|94474415|gb|EB703373.1|EB703373
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|211044163|gb|FL460074.1|FL460074
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|32933908|gb|CF038720.1|CF038720
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGGCTCGACAAACGAAGAACCTTCAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|50323071|gb|CO518197.1|CO518197
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTTCAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTTTACTCCGGAA
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGCAGTATTTGCATCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctggataaccttccctttcacagaatggaaacccgggagattcaatttggttttgtttcaacgcag
- - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC