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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCACATGTTTTCTGCACGAAAGATGCTGCTACAGTAATTAAGAGCTATAGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaagtttctttattaatgttaactgaagttttgtttatgtttgcaatctcacgaagcagcattttaatgtttataaggatgtcattctgtaaattttcttggcag

Basic information

species Zea mays
transcript GRMZM5G840928_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840928_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g17610.1 (Oryza sativa), 5'ss of exon 3
TTTCACATGTTTTCTGCACGAAAGATGCTGCTACAGTAATTAAGAGCTATAGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaagtttctttattaatgttaactgaagttttgtttatgtttgcaatctcacgaagcagcattttaatgtttataaggatgtcattctgtaaattttcttggcag
| ||||||||||||||||| | ||||||||| || ||||| ||||| ||||||||||| || ||||||||||||||| |||| ||||||||||||||||||||||   | |     |||| || ||  | |   |||    |||  |  |||  |||      || || | | |  ||||||  |   ||                     
TCTCACATGTTTTCTGCACAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATACTAGAGGAATCTTACAGTGTAAGgtaac---attcatggtatttatctttgccg---tttatactataatcacaacatcatcttcgagaatctgact--ttataattactgcacag------------------

upper sequence: GRMZM5G840928_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G19150.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTCACATGTTTTCTGCACGAAAGATGCTGCTACAGTAATTAAGAGCTATAGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaagtttctttattaatgttaactgaagttttgtttatgtt-tgcaatctcacgaagcagcattttaatgtttataaggatgtcattctgtaaattttcttggcag
| || ||||| ||||||||||||||||| ||| | || || ||||||||||| ||||| || || || || ||  |  | || ||||| || ||  | |||| | |  | |   ||    | |||   ||  | || |   |||||  |    |  |          |||  |||          || ||  | | ||              
TGTCTCATGTATTCTGCACGAAAGATGCAGCTCCTGTTATAAAGAGCTATAGTCCTGAGCTTATAGTTCACCCTGTTCTTGAGGAATCATATAGCATCAGgtgaat--actccattccacagtgtgtgct--acttctaactatgtggttttgttccgtatgtttttattacaatacccggtttcatatctgtatatag-------------

upper sequence: GRMZM5G840928_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0020g02800.t01 (Vitis vinifera), 5'ss of exon 3
TTTCACATGTTTTCTGCACGAAAGATGCTGCTACAGTAATTAAGAGCTATAGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaagtttctttattaatgttaactgaagttttgtttatgtttgcaatctcacgaagcagcattttaatgtttataaggatgtcattctgtaaattttcttggcag
| || ||||| |||||||| |||||||||||| |||| || || ||||| ||||||||  ||||||| || ||  | |||||||||||||| ||||| |||| |      ||  || | || | |    |    ||     ||| ||||   | | |   |     ||  | ||  || | |  |    ||| |                 
TATCTCATGTGTTCTGCACTAAAGATGCTGCTCCAGTCATAAAAAGCTACAGCCCTGAGTTAATTGTGCACCCCCTTTTAGAAGAATCTTATAGTGTTAGgtga-----attctttaactagtttgcttttcccttcaacatatatttgttttattattgaatgctatgcttattcttgtgaaaactatattttcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76020592|gb|DT947762.1|DT947762
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|71766337|gb|DR964274.1|DR964274
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|211190739|gb|FL216448.1|FL216448
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAA-
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|211152681|gb|FL231436.1|FL231436
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|101395549|gb|EB819702.1|EB819702
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|50323072|gb|CO518198.1|CO518198
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|101385680|gb|EB814888.1|EB814888
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCCTA-GATTCTTACGGGAAGTTGCA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTC-TAAGATTCTTACGG-AAGTTGCA
EST: gi|211190740|gb|FL216449.1|FL216449
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|211190742|gb|FL216451.1|FL216451
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|211190743|gb|FL216452.1|FL216452
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACTGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
EST: gi|76912720|gb|DV164861.1|DV164861
EST:     AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAG                         GGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA
genomic: AGCCCTGAACTAATTGTACATCCAATATTAGAAGAATCTTACAGTGTAAGgtaactgaag ... ttcttggcagGGTTGATGAACGAGCATCTGTTTCTTCTAAGATTCTTACGGAAGTTGCAAA