Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtaattttctgttggtttagactgtagaaacagtcttgttacagaagtaatatcaggatccatacttctaatatctcctcaacttatcttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG

Basic information

species Zea mays
transcript GRMZM5G840928_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840928_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g17610.1 (Oryza sativa), 3'ss of exon 4
ttgtaattttctgttggtttagactgtagaaacagtcttgttacaga-agtaatatcaggatccatacttctaatatctcctcaacttatcttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG
 | |||| | || |  |   |   ||          ||   |||  |   || |||    ||   |     ||   |    |  || ||||||| |||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||||| || || || |||
-tctaatctcctatatggagatcatgccatcttgccctaagtacttacgatagtattcaaatttgtcagcttatgtttgttttgacatatcttacttgtagGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766337|gb|DR964274.1|DR964274
EST:     TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTG                         GAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT
genomic: TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTGgttagtttgc ... ttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT
EST: gi|101395549|gb|EB819702.1|EB819702
EST:     TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTG                         GAATGTGTGAGTAATATCCTGAGGCACGCACGACAGGCTAATATTCCAACT
genomic: TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTGgttagtttgc ... ttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT
EST: gi|50323072|gb|CO518198.1|CO518198
EST:     TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTG                         GAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT
genomic: TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTGgttagtttgc ... ttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT
EST: gi|211190743|gb|FL216452.1|FL216452
EST:     TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCC-TTTCTTTTG                         GAATGTGTGAG
genomic: TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTGgttagtttgc ... ttatttgtagGAATGTGTGAG
EST: gi|76912720|gb|DV164861.1|DV164861
EST:     TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTG                         GAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT
genomic: TTGATTGCATTGTTGTTGGTCCTGGCCTTGGAAGGGACCCCTTTCTTCTGgttagtttgc ... ttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtaatatcaggatccatacttctaatatctcctcaacttatcttatttgtagGAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG
                      ttctaat  putative branch site (score: 2)
                                       cttatctt  putative PPT
                                     aacttatcttattt  TA-rich tract