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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatggagttatttatttgttcttttttctttagcttcagttatgagtcatttaaactcagtgtgtctgcttttcaggatggcctatttcttgtaaacaataaccttaatcttgttgaag

Basic information

species Zea mays
transcript GRMZM5G840928_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840928_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g17610.1 (Oryza sativa), 5'ss of exon 5
GAATGTGTGAGTAATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatggagttatttatttgttcttttttctttagcttcagttatgagtcatttaaactcagtgtgtctgcttttcaggatggcctatttcttgtaaacaataaccttaatcttgttgaag
|| ||||| |||||||||||||| || ||||| ||||| ||||||||||| || || || ||||||  |  ||   || |||             |  ||      | |||| | | ||   |||      ||  |  |||| ||  ||  ||                                   
GACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGgtaccatttgacttttttttaaaaaaaaaacatacttga----aattataaattat--gaacaggacttga-tattttttag--tgatctgcag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50323072|gb|CO518198.1|CO518198
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GAAACCCTCTTGCCATTTTAACACCAAATGTCTATGAGTACAAGCGTCTTG
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... cttgttgaagGAAACCCTCTTGCCATTTTAACACCAAATGTCTATGAGTACAAGCGTCTTG