Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatcagatagcatgctctagttgatgaatacggatgccattattaacctaatgcctaatattttttatgtctctttccctttttatacatgtatgtatgcattacattatttcaattcaattttgtag

Basic information

species Zea mays
transcript GRMZM5G807639_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211347968|gb|FL368837.1|FL368837
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211126388|gb|FL388997.1|FL388997
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211511665|gb|FL408091.1|FL408091
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211288450|gb|FL410952.1|FL410952
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211042919|gb|FL416910.1|FL416910
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211011070|gb|FL374939.1|FL374939
EST:     CTTTGATTCCAGTTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211150258|gb|FL395029.1|FL395029
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211479894|gb|FL423794.1|FL423794
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211275057|gb|FL384329.1|FL384329
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|67025111|gb|CO453860.1|CO453860
EST:     CAGCTACTTCTCAATGCTCAAATCTGAC---                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211137577|gb|FL389523.1|FL389523
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGAC---                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|31357726|gb|CD442083.1|CD442083
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211461966|gb|FL427684.1|FL427684
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|32862756|gb|CF002438.1|CF002438
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|30306817|gb|CD001490.1|CD001490
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211050734|gb|FL374465.1|FL374465
EST:     CTTTGATTCCAGCTACTTCTCANTGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTA
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTA
EST: gi|211518170|gb|FL380292.1|FL380292
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211494399|gb|FL426463.1|FL426463
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211418591|gb|FL407188.1|FL407188
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211490936|gb|FL402016.1|FL402016
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|31349005|gb|CD433362.1|CD433362
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211317708|gb|FL417584.1|FL417584
EST:     CTTTGATTCCAGCTACTTCTCAATGCYCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211157939|gb|FL380349.1|FL380349
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|28187901|gb|CB179511.1|CB179511
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211437186|gb|FL418966.1|FL418966
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|37420219|gb|CF647798.1|CF647798
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|93017175|gb|EB642695.1|EB642695
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211305586|gb|FL419218.1|FL419218
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211002857|gb|FL384096.1|FL384096
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211142865|gb|FL377125.1|FL377125
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTNGTACCAAGTTTGGAGTAGGT
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCT-GTACCAAGTTTGGAGTAGGT
EST: gi|211530093|gb|FL390761.1|FL390761
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211235901|gb|FL373720.1|FL373720
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211431976|gb|FL418926.1|FL418926
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211063833|gb|FL423073.1|FL423073
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATGACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211441962|gb|FL416333.1|FL416333
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211094733|gb|FL379398.1|FL379398
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|67031724|gb|CO460473.1|CO460473
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC
EST: gi|211539307|gb|FL400264.1|FL400264
EST:     CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAG                         AAGACGCTATTACTTACCTAATCCAKSTCTGTACCAAGTTTGGAGTAGGTC
genomic: CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 289

CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTCATTTGCCTCAGACAGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 511

CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTCATTTGCCTCAGACAGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 457

CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTCATTTGCCTCAGACAGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 442

CTTTGATTCCAGCTACTTCTCAATGCTCAAATCTGACAAGgtaattatca ... aattttgtagAAGACGCTATTACTTACCTAATCCATCTCTGTACCAAGTTTGGAGTAGGTCATTTGCCTCAGACAGCG