1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tagcaatgctgatacacaaatgatacacagagtataaggttctatagtttcggtactccacttcaattttttcttcctcaccgttttgattttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG
species | Zea mays |
transcript | GRMZM5G807639_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211126388|gb|FL388997.1|FL388997
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211487455|gb|FL379759.1|FL379759
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211511665|gb|FL408091.1|FL408091
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211288450|gb|FL410952.1|FL410952
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211042919|gb|FL416910.1|FL416910
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211011070|gb|FL374939.1|FL374939
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211150258|gb|FL395029.1|FL395029
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211479894|gb|FL423794.1|FL423794
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211275057|gb|FL384329.1|FL384329
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCTTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCATTCAAEST: gi|211137577|gb|FL389523.1|FL389523
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|31357726|gb|CD442083.1|CD442083
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCATAAACTACAGCGGGGGAEST: gi|211461966|gb|FL427684.1|FL427684
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|32862756|gb|CF002438.1|CF002438
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|30306817|gb|CD001490.1|CD001490
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211050734|gb|FL374465.1|FL374465
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211518170|gb|FL380292.1|FL380292
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211494399|gb|FL426463.1|FL426463
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211418591|gb|FL407188.1|FL407188
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211490936|gb|FL402016.1|FL402016
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: AATGGCGTCCCGCGTCGCCTCGGGCCAWCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|31349005|gb|CD433362.1|CD433362
genomic: AATGGCGTCCCGCGTCGCCTCGGGCC-TCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCTTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211317708|gb|FL417584.1|FL417584
genomic: GTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211157939|gb|FL380349.1|FL380349
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|28187901|gb|CB179511.1|CB179511
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211437186|gb|FL418966.1|FL418966
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|37420219|gb|CF647798.1|CF647798
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|93017175|gb|EB642695.1|EB642695
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211305586|gb|FL419218.1|FL419218
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211002857|gb|FL384096.1|FL384096
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211142865|gb|FL377125.1|FL377125
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211530093|gb|FL390761.1|FL390761
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211235901|gb|FL373720.1|FL373720
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211431976|gb|FL418926.1|FL418926
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211063833|gb|FL423073.1|FL423073
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211441962|gb|FL416333.1|FL416333
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211094733|gb|FL379398.1|FL379398
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|67031724|gb|CO460473.1|CO460473
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTTGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAAEST: gi|211539307|gb|FL400264.1|FL400264
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
agtttcggtactccacttcaattttttcttcctcaccgttttgattttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG
ttttttcttcctcacc CT-rich tract
ttcaattttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcaatgctgatacacaaatgatacacagagtataaggttctatagtttcggtactccacttcaattttttcttcctcaccgttttgattttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - tgctgat
- - - - - gatacac
- - - - - - -acacaaa