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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccctctttttttttcactcgccgatgcatctatgtctgcggctagcttttgtgctcccttgtttcttccggtagccagcagatttatggtccg...

Basic information

species Zea mays
transcript GRMZM5G807639_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807639_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g32330.1 (Oryza sativa), 5'ss of exon 1
----ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccctctttttttttcactcgccgatgcatctatgtctgcggctagcttttgtgctcccttgtttcttccggtagccagcagatttatggtccg
     |  | ||||||||  || |    ||||||||||| | ||| || ||||||||||||||||||| |||||||  ||||||||||||||  |  ||  |      | |||| | |      || |||  |   |  ||   |  ||||  |     || | ||| ||  | |||  |  |  |   |   ||| ||     
GCACGCGACTCCTCCCCCCTCCGCCGCCGCCGCCGCCGCAGCGAG-ACCCCGGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcccccccctcccccctctctccgctccgactcgcggcgtgcgattttgcattcttctctctc-tctctctctctctctctctcctttttgtct--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211347968|gb|FL368837.1|FL368837
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211126388|gb|FL388997.1|FL388997
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211487455|gb|FL379759.1|FL379759
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211511665|gb|FL408091.1|FL408091
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211288450|gb|FL410952.1|FL410952
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211042919|gb|FL416910.1|FL416910
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211011070|gb|FL374939.1|FL374939
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211150258|gb|FL395029.1|FL395029
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211479894|gb|FL423794.1|FL423794
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211275057|gb|FL384329.1|FL384329
EST:     GAATGGCGTCCCGCGTCGCTTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCATTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211137577|gb|FL389523.1|FL389523
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|31357726|gb|CD442083.1|CD442083
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCATAAACTACAGCGGGGGA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211461966|gb|FL427684.1|FL427684
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|32862756|gb|CF002438.1|CF002438
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|30306817|gb|CD001490.1|CD001490
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211050734|gb|FL374465.1|FL374465
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211518170|gb|FL380292.1|FL380292
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211494399|gb|FL426463.1|FL426463
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211418591|gb|FL407188.1|FL407188
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211490936|gb|FL402016.1|FL402016
EST:     AATGGCGTCCCGCGTCGCCTCGGGCCAWCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: AATGGCGTCCCGCGTCGCCTCGGGCC-TCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|31349005|gb|CD433362.1|CD433362
EST:     GTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCTTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211317708|gb|FL417584.1|FL417584
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211157939|gb|FL380349.1|FL380349
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|28187901|gb|CB179511.1|CB179511
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211437186|gb|FL418966.1|FL418966
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|37420219|gb|CF647798.1|CF647798
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|93017175|gb|EB642695.1|EB642695
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211305586|gb|FL419218.1|FL419218
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211002857|gb|FL384096.1|FL384096
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211142865|gb|FL377125.1|FL377125
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211530093|gb|FL390761.1|FL390761
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211235901|gb|FL373720.1|FL373720
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211431976|gb|FL418926.1|FL418926
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211063833|gb|FL423073.1|FL423073
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211441962|gb|FL416333.1|FL416333
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211094733|gb|FL379398.1|FL379398
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|67031724|gb|CO460473.1|CO460473
EST:     GAATGGCGTCCCGCGTTGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
EST: gi|211539307|gb|FL400264.1|FL400264
EST:     GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCC                         ACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA
genomic: GAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 164

ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 344

ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 316

ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 208

ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccc ... tttcttgcagACTCTAGGGCTACTAAGGAGTCATACACATGTCAGAAACTACAGCAGTCAACTTTCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTGCCCCTCCCCCTCCCTCACAAGCCGCCGCCGCCGTGAGGACTCCGGCGAATGGCGTCCCGCGTCGCCTCGGGCCTCCTCCGCCGCCGCGCCGTCGCCgtaatgcccctctttttttttcactcgccgatgcatctatgtctgcggctagcttttgtgctcccttgtttcttccggtagccagcagatttatggtccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccctt