1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCGCTCTCGATTGATGACATGGCAGGAGGAACATTCACTATCTCCAATGGTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctactaaacatttatcagttgcaacacatttgtagcatgcagatgtttatattgatctgaaacatgatctatgtgaaatgcag
species | Zea mays |
transcript | GRMZM5G807639_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|93017174|gb|EB642694.1|EB642694
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|6918669|gb|AW400199.1|AW400199
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|16925492|gb|BM078560.1|BM078560
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|32935625|gb|CF040437.1|CF040437
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTAGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|16919656|gb|BM074297.1|BM074297
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|5871687|gb|AW018158.1|AW018158
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|60343714|gb|DN210687.1|DN210687
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|32866729|gb|CF006411.1|CF006411
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|16926010|gb|BM079078.1|BM079078
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|30306816|gb|CD001489.1|CD001489
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: CTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|60349623|gb|DN216596.1|DN216596
genomic: CTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|6918383|gb|AW399913.1|AW399913
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|211104574|gb|FL031920.1|FL031920
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATEST: gi|6020821|gb|AW065749.1|AW065749
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTNCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGNTGTGAATEST: gi|60399105|gb|DN231919.1|DN231919
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAG TCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctacta ... tgaaatgcagTCGTCAATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTCTCGATTGATGACATGGCAGGAGGAACATTCACTATCTCCAATGGTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCCCCACAGgtagctactaaacatttatcagttgcaacacatttgtagcatgcagatgtttatattgatctgaaacatgatctatgtgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC