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...tatcctaaagctattgtacctagaaaagccaaaacacaaaacagcctatagtttgggatggtgtatttactatgtatatcactgactgaaacttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACATTGAGAAAGGGATAAACAACCTTGCAAAGAAGGCAAATGAGGGGGCGC
species | Zea mays |
transcript | GRMZM5G807639_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|93017174|gb|EB642694.1|EB642694
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|16925492|gb|BM078560.1|BM078560
genomic: TCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCATGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|32935625|gb|CF040437.1|CF040437
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|16919656|gb|BM074297.1|BM074297
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|7031253|gb|AW461141.1|AW461141
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|60343714|gb|DN210687.1|DN210687
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|6056485|gb|AW090875.1|AW090875
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|6918383|gb|AW399913.1|AW399913
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGNTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|211104574|gb|FL031920.1|FL031920
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: GTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|211169877|gb|FL077606.1|FL077606
genomic: GTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|6020821|gb|AW065749.1|AW065749
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACEST: gi|60399105|gb|DN231919.1|DN231919
genomic: TCATATACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
EST: TACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAG GGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
genomic: TACAGAGACTACGTAGACGTCAGTGTTGCTGTTGGCACTTCCAAGgtgccatatt ... acttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGAC
ctatagtttgggatggtgtatttactatgtatatcactgactgaaacttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACATTGAGAAAGGGATAAACAACCTTGCAAAGAAGGCAAATGAGGGGGCGC
cactgac putative branch site (score: 318)
cttctcc putative PPT
tatttactatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcctaaagctattgtacctagaaaagccaaaacacaaaacagcctatagtttgggatggtgtatttactatgtatatcactgactgaaacttctccagGGCCTTGTGGTGCCTGTTATCCGAGATGCTGATACCATGAACTTTGCTGACATTGAGAAAGGGATAAACAACCTTGCAAAGAAGGCAAATGAGGGGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - -gctattg
- - - - - - - - - - tagaaaag
- - - - - - - - - - - - - - - -aaacaca
- - - - - - - - - - - - - - - - - - - aaacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgactg