Sequence
atgc intronic sequence ATGC exonic sequence...gattgtatgatactttcaagtttagaaacaggaagcttgttgctatgattgatgtggacaggaaatatgggcataccattattaacaaactcacttgcagAGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G806449_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g56850.1 (Oryza sativa), 3'ss of exon 8
------gattgtatgatactttcaagtttagaaacaggaagcttgttgctatgattgatgtggacaggaaatatgggcataccattattaacaaactcacttgcagAGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG
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tatggagaaagaatgccaatgtcatttttattagccaaaatttcaa-gctattgattacggttctatccaccatgatta----atggcgaattgactaa-ttgcagAGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAGGGGAATCAGATTACATCCAGGGACAAATCTATCTGAG
upper sequence: GRMZM5G806449_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA16G27210.1 (Glycine max), 3'ss of exon 8
--gattgtatgatactttcaagtttagaaacaggaagcttgttgctatgattgatgtggacaggaaatatgggcataccattattaacaaactcacttgcagAGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG
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gaagttttctgataacactcattattccttagtttttgttaacatcatttttgctgtttgtagcataccttactccccactgaataa--aattctgttgcagAGGTTTTGATGATGAAATGAGAGCTGCAGTGGCAAGAAATCTTGAAGGCAGGGGAATTAATTTGCATCCAAGGACCAATTTGACACAG
upper sequence: GRMZM5G806449_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G08180.1 (Glycine max), 3'ss of exon 7
gattgtatgatactttcaagtttagaaacaggaagcttgttgctatgattgatgtggacaggaaatatgggcatacc--attattaac------aaactcacttgcagAGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG
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--gtttatactactcac-----tattaataggttgcattattccctagtttttgctaacatcatttttag-cataccttactccccactgaataaaattctgttgcagAGGTTTTGATGATGAAATGAGAGCTGTAGTTGCAAGAAATCTTGAAGGCAGGGGAATTAATTTGCATCCAAGGACCAATCTGACACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattgatgtggacaggaaatatgggcataccattattaacaaactcacttgcagAGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG
ctcactt CT-rich tract
attattaacaaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattgtatgatactttcaagtttagaaacaggaagcttgttgctatgattgatgtggacaggaaatatgggcataccattattaacaaactcacttgcagAGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG
- ttgtatg
- - - - - - - - - - - -agaaacag
- - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - -attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa