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CGTCGCGGATGGTGGGCACTATGACTACGATCTCTTCGTCATCGGGGCGGGCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgcttccccacaccccaccagctcctatgcctgacgtgatgcctcctagccgtgatacccgagcccatctactgtcgcctcgctgctctatccg...
species | Zea mays |
transcript | GRMZM5G806449_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211339790|gb|FK980806.1|FK980806
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211339794|gb|FK980810.1|FK980810
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|33942501|gb|CF349101.1|CF349101
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211339793|gb|FK980809.1|FK980809
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337407|gb|FK980805.1|FK980805
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211339796|gb|FK980812.1|FK980812
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337405|gb|FK980803.1|FK980803
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|40485831|gb|CK394761.1|CK394761
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGTTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|33942302|gb|CF348902.1|CF348902
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|148945432|gb|EC890664.2|EC890664
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337397|gb|FK980795.1|FK980795
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337400|gb|FK980798.1|FK980798
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|148969995|gb|EE020910.2|EE020910
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337398|gb|FK980796.1|FK980796
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|148960879|gb|EE011558.2|EE011558
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|33101538|gb|CF061498.1|CF061498
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|111991059|gb|EE331961.1|EE331961
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGCGGATGGTGGGCACTATGACTACGATCTCTTCGTCATCGGGGCGGGCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgcttccccacaccccaccagctcctatgcctgacgtgatgcctcctagccgtgatacccgagcccatctactgtcgcctcgctgctctatccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc