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gttatcttttctttcttccctagctttctcttctttgcctgtggggcgtatttacacctgtccaccgataaatctgattgagattgtattgggaagttgaatttatcactaacacaagtttcagtttattttgagtaatttaaatgtttgtttcaatgttgtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATGTAACAAACCGGATTAATTTAACACCTGTTGCATTGATGGAGGCAACTT
species | Zea mays |
transcript | GRMZM5G806449_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211368053|gb|FL471715.1|FL471715
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: CGTTGAGATTGA-CGGG-TGGAGCCCATCAAG GTTGACGAATATCCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAEST: gi|76012766|gb|DT939936.1|DT939936
genomic: CGTTGAGATTGACCGGGTTGGAG-CCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGA
EST: TGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|91056621|gb|EB167039.1|EB167039
genomic: TGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|148937230|gb|EC881412.2|EC881412
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|71311903|gb|DR792430.1|DR792430
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: AGGCGTTGAGA-TGACCCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
genomic: AGGCGTTGAGATTGA-CCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
aagtttcagtttattttgagtaatttaaatgtttgtttcaatgttgtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATGTAACAAACCGGATTAATTTAACACCTGTTGCATTGATGGAGGCAACTT
tctattt CT-rich tract
tttattttgagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatcttttctttcttccctagctttctcttctttgcctgtggggcgtatttacacctgtccaccgataaatctgattgagattgtattgggaagttgaatttatcactaacacaagtttcagtttattttgagtaatttaaatgtttgtttcaatgttgtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATGTAACAAACCGGATTAATTTAACACCTGTTGCATTGATGGAGGCAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG