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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGACCGCGACCCGCAGGTGACATACATACGGTGCGAGCGCCGGAAGCCGGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatatttcgagcggaacagcttcgtattatttgcgccggcgaaatttctggctcgtttgtccccgcggttctgctgaggccagatttcctcctgcggcgttgaattgcgcgctcgacctag

Basic information

species Zea mays
transcript GRMZM5G806449_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211339792|gb|FK980808.1|FK980808
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211339790|gb|FK980806.1|FK980806
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211339794|gb|FK980810.1|FK980810
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|33942501|gb|CF349101.1|CF349101
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGG-TTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
EST: gi|211339793|gb|FK980809.1|FK980809
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211337407|gb|FK980805.1|FK980805
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211339796|gb|FK980812.1|FK980812
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211337405|gb|FK980803.1|FK980803
EST:     ACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGGCGAGAAAGA
genomic: ACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCAT-GGCGAGGAAGA
EST: gi|40485831|gb|CK394761.1|CK394761
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTT-GTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
EST: gi|33942302|gb|CF348902.1|CF348902
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGG-TTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
EST: gi|148945432|gb|EC890664.2|EC890664
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211337397|gb|FK980795.1|FK980795
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211337400|gb|FK980798.1|FK980798
EST:     ACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: ACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|148969995|gb|EE020910.2|EE020910
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|211337398|gb|FK980796.1|FK980796
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|148960879|gb|EE011558.2|EE011558
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|33101538|gb|CF061498.1|CF061498
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGGTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGAT
EST: gi|111991059|gb|EE331961.1|EE331961
EST:     GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAG                         GGTTTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA
genomic: GGAAGCACCGGTGACGAAGCCTTCCGTGTCATCACTCATCAGGATCTCAGgtgcatattt ... ctcgacctagGG-TTTTGTTTCGTTTCGCGGGCGTTGGGAATCCATCCATGGCGAGGAAGA