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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatagtagagcatgcctgttagattttcttgtctgctccatttgcaggcttacaccctgtgagctctgacatatatgtcttgtaccacatccaaagatctgactgttccctgttttcttcagtcatgcgctctgctttgtagtttctatatctcctatagaagtttgtaattcggtctatgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG

Basic information

species Zea mays
transcript GRMZM5G806449_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G806449_T03 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g56850.1 (Oryza sativa), 3'ss of exon 14
gtaagcatagtagagcatgcctgttagattttcttgtctgctccatttgcaggcttacaccctgtgagctctgacatatatgtcttgtaccacatccaaagatctgactgttccctgttttcttcagtcatgcgctctgctttgtagtttctatatctcctatagaagtttgtaattcggtcta-tgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG
                                                                                  || || |||| |   ||   |||     |     |      |||||    ||   | |||| ||||| || |   ||   |  |  ||  | | ||||   | | |||| || || |||||||||||  ||||||||||||| |||||| | || ||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||
----------------------------------------------------------------------------------tcatggaccata---aacattctagtaatg----gagcctatcagtgt--cgtcattctttatagttcctgt---tctggtgaagtttcctgactcggctcactttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAG

upper sequence: GRMZM5G806449_T03 (Zea mays), 3'ss of exon 14
lower sequence: Vv05s0051g00870.t01 (Vitis vinifera), 3'ss of exon 15
gtaagcatagtagagcatgcctgttagattttcttgtctgctccatttgcaggcttacaccctgtgagctctgacatatatgtcttgtaccacatccaaagatctgactgttccctgttttcttcagtcatgcgctctgctttgtagtttctatatctcctatagaagtttgtaattcggtctatgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG
                                                                                       || |  |  ||  ||| |      | | | | |  | |||  ||  | | |   ||  |   |||  ||    || | |   ||    |     || ||| || || || || |||||||| || ||||| ||  | ||||||||||| || |||||||| ||||| ||||| ||||| || |||||||||||||||||||| |||
---------------------------------------------------------------------------------------taactgacacat-gatatattcagttctt-tctcttacagcaattggatgt-tgttaaaccctctgaat---ttaaaaattatttccttatatcctgtgtatttagACGGCAAGAGAAGACAATTATGAAGCTTCTTGTTGATGCTGAGACAGACAAAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350945|gb|BM895477.1|BM895477
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|76293304|gb|DV032872.1|DV032872
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|19350946|gb|BM895478.1|BM895478
EST:     ATTCTTGTTTTCATCACATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|32845839|gb|CD985520.1|CD985520
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|37378953|gb|CF626201.1|CF626201
EST:     CTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: CTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|211368053|gb|FL471715.1|FL471715
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|47961792|gb|CN844501.1|CN844501
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|58030045|gb|CX725472.1|CX725472
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|37380707|gb|CF627182.1|CF627182
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|14646262|gb|BI180451.1|BI180451
EST:     AGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: AGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|37395251|gb|CF634905.1|CF634905
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|71757895|gb|DR955832.1|DR955832
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|76012766|gb|DT939936.1|DT939936
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|16916633|gb|BM072928.1|BM072928
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|110942635|gb|EE162792.1|EE162792
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|31405874|gb|CD484606.1|CD484606
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|91056621|gb|EB167039.1|EB167039
EST:     ATTCTTGTTTTCATTTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|56382549|gb|CV985218.1|CV985218
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|71310532|gb|DR791561.1|DR791561
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|37381448|gb|CF627611.1|CF627611
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|6095693|gb|AW120360.1|AW120360
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|67025835|gb|CO454584.1|CO454584
EST:     TTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: TTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|31664369|gb|CD573094.1|CD573094
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|37377035|gb|CF625088.1|CF625088
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|14243079|gb|BG840745.2|BG840745
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|16927664|gb|BM080733.1|BM080733
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|31664100|gb|CD573280.1|CD573280
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|32939543|gb|CF044362.1|CF044362
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|30088227|gb|CB886432.1|CB886432
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|31611972|gb|CD568594.1|CD568594
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|148937230|gb|EC881412.2|EC881412
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|71311903|gb|DR792430.1|DR792430
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|45847417|gb|CN071360.1|CN071360
EST:     ATTCTTGTTTTCATCTCATCGTTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|149077607|gb|EE166307.2|EE166307
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
EST: gi|6031612|gb|AI668515.2|AI668515
EST:     ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAA                         GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA
genomic: ATTCTTGTTTTCATCTCATCATTCAACCCAATGAAGAACAGCATATCCAAgtaagcatag ... atgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgtagtttctatatctcctatagaagtttgtaattcggtctatgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG
                                              tgttttc  CT-rich tract
         tttctatat  TA-rich tract