1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGACGTGTTCTACACGAGCTCCAGCGGGGCGCGGAACCAGGAGTGCCTCTCCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccactcacggtgcagctgtggaagcagcttcatgtcgctgacgcttacgctggctaaccaatcagatcgtgcattgttcgtggcgctgctag
species | Zea mays |
transcript | GRMZM5G803981_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAG TTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTGEST: gi|149107686|gb|EE189563.2|EE189563
genomic: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccac ... gcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
EST: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAG TTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTGEST: gi|148969543|gb|EE020371.2|EE020371
genomic: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccac ... gcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
EST: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAG TTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
genomic: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccac ... gcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGTGTTCTACACGAGCTCCAGCGGGGCGCGGAACCAGGAGTGCCTCTCCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccactcacggtgcagctgtggaagcagcttcatgtcgctgacgcttacgctggctaaccaatcagatcgtgcattgttcgtggcgctgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT