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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggggccactcacggtgcagctgtggaagcagcttcatgtcgctgacgcttacgctggctaaccaatcagatcgtgcattgttcgtggcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTGGACTCCGGCCTGATCGTGGACATCGAAGTCGGGCTTGGCCCTGCGGGGG

Basic information

species Zea mays
transcript GRMZM5G803981_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211101806|gb|FL362944.1|FL362944
EST:     CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAG                         TTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
genomic: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccac ... gcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
EST: gi|149107686|gb|EE189563.2|EE189563
EST:     CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAG                         TTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
genomic: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccac ... gcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
EST: gi|148969543|gb|EE020371.2|EE020371
EST:     CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAG                         TTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG
genomic: CCATTGGCGTCGACGACGAGCCGCTGTTCCATGGCAGGACTGCCATCCAGgtggggccac ... gcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacgcttacgctggctaaccaatcagatcgtgcattgttcgtggcgctgctagTTGTATGCCGATTTCATGAAGAGCTTCAGGGAGAACATGGCGGACTTCCTGGACTCCGGCCTGATCGTGGACATCGAAGTCGGGCTTGGCCCTGCGGGGG
              ggctaac  putative branch site (score: 2)