1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagctaaagctaaacgttccaccagagacacgcctgcaaaaaatcgatcaagttgcatcactgtccaatgtccatgatgaacacgacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGGGAGCAGCTGCGGCGGCTGCGGGGGGCCGGCGTCGACGGCGTGATGGTGG
species | Zea mays |
transcript | GRMZM5G803981_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCA CTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGGEST: gi|148933671|gb|EC877567.2|EC877567
genomic: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAgtaagctaaa ... gacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGG
EST: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCA CTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGGEST: gi|148969543|gb|EE020371.2|EE020371
genomic: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAgtaagctaaa ... gacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGG
EST: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCA CTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGGEST: gi|149078052|gb|EE166793.2|EE166793
genomic: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAgtaagctaaa ... gacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGG
EST: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCA CTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGGEST: gi|149105248|gb|EE290739.2|EE290739
genomic: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAgtaagctaaa ... gacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGG
EST: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCA CTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGG
genomic: AGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAgtaagctaaa ... gacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctaaagctaaacgttccaccagagacacgcctgcaaaaaatcgatcaagttgcatcactgtccaatgtccatgatgaacacgacgtggcagCTTGAAGTGGTGACCACCGAGAACGACCTGGAGGACGCGGGGAAGCTGCGGGAGCAGCTGCGGCGGCTGCGGGGGGCCGGCGTCGACGGCGTGATGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG