Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcatccatttcgaactacgctgaatttggcagttgaacatttcaaggacgagacacaatttctcagtacaccatgctaacggcctcgccgtcgtctcagGTGAAGCCGCAACAATGGGGTACATGCGGGGTCAGCGTGGCATCGACGCCGGCGCTTCTTCCGCCACCGGCCGCCGGACGGCTTGTCGCCGTCGATACCA

Basic information

species Zea mays
transcript GRMZM5G803981_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933671|gb|EC877567.2|EC877567
EST:     GATAGCATATCGATCGCCGAAACGGAACAAATTTGTGTGACAGAGAGTGG                         GTGAAGCCGCAACAATGGGGTACATGCGGGGTCAGCGTGGCATCGACGCCG
genomic: GATAGCATATCGATCGCCGAAACGGAACAAATTTGTGTGACAGAGAGTGGgtgagtgagt ... gtcgtctcagGTGAAGCCGCAACAATGGGGTACATGCGGGGTCAGCGTGGCATCGACGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggacgagacacaatttctcagtacaccatgctaacggcctcgccgtcgtctcagGTGAAGCCGCAACAATGGGGTACATGCGGGGTCAGCGTGGCATCGACGCCGGCGCTTCTTCCGCCACCGGCCGCCGGACGGCTTGTCGCCGTCGATACCA
                             tgctaac  putative branch site (score: 1)
                                              tcgtctc  putative PPT
          acaattt  TA-rich tract