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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGTCGCCGTCGATACCAGGAGGAGGACGAGGACGGTTGCCTCCGCCGCGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgcgttcgagcgttaattataccgcagtgtttaatgccttcgaacgttcacggatcgcattattcttgtcggcag

Basic information

species Zea mays
transcript GRMZM5G803981_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107686|gb|EE189563.2|EE189563
EST:     CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAG                         CCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
genomic: CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgc ... ttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
EST: gi|148933671|gb|EC877567.2|EC877567
EST:     CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAG                         CCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
genomic: CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgc ... ttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
EST: gi|148969543|gb|EE020371.2|EE020371
EST:     CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAG                         CCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
genomic: CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgc ... ttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
EST: gi|149078052|gb|EE166793.2|EE166793
EST:     CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAG                         CCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
genomic: CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgc ... ttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
EST: gi|149105248|gb|EE290739.2|EE290739
EST:     CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAG                         CCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
genomic: CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgc ... ttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC