1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tactcaagatttcgaactgcattattttgctttgttattttaaattcttaacattttctgtggaagttactgatcatttgatgaacctctgctgggacagAAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCGAAACTAGGCATTGGAAGTACCAAAGCAGGTGCTAGAGCTGACAGTGATG
species | Zea mays |
transcript | GRMZM2G402242_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTACATTTCTAGTCAG AAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCGEST: gi|101389613|gb|EB816739.1|EB816739
genomic: GGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTACATTTCTAGTCAGgtatcgtcat ... gctgggacagAAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCG
EST: GGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTACATTTCTAGTCAG AAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCG
genomic: GGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTACATTTCTAGTCAGgtatcgtcat ... gctgggacagAAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCG
tcttaacattttctgtggaagttactgatcatttgatgaacctctgctgggacagAAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCGAAACTAGGCATTGGAAGTACCAAAGCAGGTGCTAGAGCTGACAGTGATG
cctctgct CT-rich tract
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactcaagatttcgaactgcattattttgctttgttattttaaattcttaacattttctgtggaagttactgatcatttgatgaacctctgctgggacagAAATTATGCAAAGCATGCGTCTTGCTGGATGGATTGAATCGAGGCTTGCCGAAACTAGGCATTGGAAGTACCAAAGCAGGTGCTAGAGCTGACAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - ctgcatt
- - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg