Sequence
atgc intronic sequence ATGC exonic sequence...ggttttgctcgtgaatttattaaagatttagaaagaatgaggtaaatactgaattttctccatatatatattcaatggatgtgtgcatgttctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G402242_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g52470.2 (Oryza sativa), 3'ss of exon 9
---------------------ggttttgctcgtgaatttattaa--agatttagaaagaatgaggtaaatactgaattttctccatatata----tattcaatggatgtgtgcatgttctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATG---------------------------------
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gtaaaggcttctgttgtccaaaggaatgatcattatttttacatttgtgtttggtcatttcttggtaatgctttgtcatccagaagagagaagcctatttcttccttgcttctgaagttttttttttaatcttgaacttagtaaattatgaatggtgcagACCTAGAGCTATACTGGACATCATAAAATCAGGTGAGAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTAC
upper sequence: GRMZM2G402242_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g41565.1 (Oryza sativa), 3'ss of exon 8
---------------------ggttttgctcgtgaatttattaa--agatttagaaagaatgaggtaaatactgaattttc--tccatat---atatattcaatggatgtgtgcat-gttctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATG---------------------------------
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gtaaaggcttctgttgtccaaaggaatgatcattatttttccatttgtgtttggtcatttgttggtaaatactagctttgtcatccagaagagagaagcctatttcttgcttctgcagtattttttttttatcttgaacttagtaaattatgattggtgcagACCTAGAGCTATACTGGACATCATAAAATCAGGTGAGAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCAAGGAACATGTGAACGTTGTGGCTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88750729|gb|DY534870.1|DY534870EST: TCAAAAAGCTGGATTACTTTTCCACAGAAT CAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGA
genomic: TCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... tctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atactgaattttctccatatatatattcaatggatgtgtgcatgttctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATG
tgttctttttc CT-rich tract
aattttctccatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttttgctcgtgaatttattaaagatttagaaagaatgaggtaaatactgaattttctccatatatatattcaatggatgtgtgcatgttctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- ttttgct
- - - - - - - - - - - - - - -agaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt