1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatgttgcttgtaggatatgctgtttccagagttcagtgttcatacttttggttgactttttatgacgtgttgctcctgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAGATGCAAGCCCTTCAAGTATACCTATGAGAAGGAGATCGTTAT
species | Zea mays |
transcript | GRMZM2G402242_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG GTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAGEST: gi|71770543|gb|DR968480.1|DR968480
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
EST: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG GTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAGEST: gi|91872707|gb|EB402664.1|EB402664
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
EST: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG GTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAGEST: gi|87157289|gb|DY402078.1|DY402078
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
EST: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG GTTAAGTAGATGTACCTTTATAACTACTGGTGEST: gi|50323940|gb|CO519066.1|CO519066
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTG
EST: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG GTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
ttcagtgttcatacttttggttgactttttatgacgtgttgctcctgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAGATGCAAGCCCTTCAAGTATACCTATGAGAAGGAGATCGTTAT
ggttgac putative branch site (score: 4)
ttgctcct putative PPT
actttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgttgcttgtaggatatgctgtttccagagttcagtgttcatacttttggttgactttttatgacgtgttgctcctgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAGATGCAAGCCCTTCAAGTATACCTATGAGAAGGAGATCGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC