Sequence
atgc intronic sequence ATGC exonic sequenceGTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctggatcttttttctgttcagttcttttcattttttcccgcattgaaggagaccactttattccaatatcagaaaatgctaggatgtcacttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g52470.2 (Oryza sativa), 5'ss of exon 8
GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctggatcttttttctgttcagttcttt-----tcattttttcccgcattgaaggagaccactttattcca-atatcagaaaatgctaggatgtcacttg
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GTATGCATATTTCAAAAAGCTGGACTACTTCTCCACAGAATgtaatttcttactccttcctatgtatagatgttcagcagtcactgactagcattctgtaaccaatcatgcttttatacacactagcaataattctgctaa------
upper sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G00350.1 (Glycine max), 5'ss of exon 1
-----------------------------------------------------------GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctggatcttttttctgttcagttcttttcattttttcccgc-attgaaggagaccactttattc-caatatcagaaaatgctaggatgtcacttg
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GATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATgtaaccttc----ctttcttttcctc--ttattttcccctctaactgccaaacaaacatttcactctctctacaattccag---------------------
upper sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G00350.3 (Glycine max), 5'ss of exon 1
----------------------------------------------------------------------------------------------------GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctggatcttttttctgttcagttcttttcattttttcccgc-attgaaggagaccactttattc-caatatcagaaaatgctaggatgtcacttg
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TTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATgtatgcttatttcaagaagctcgattacttttccaccgaatgtaaccttc----ctttcttttcctc--ttattttcccctctaactgccaaacaaacatttcactctctctacaattccag---------------------
upper sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G44270.2 (Arabidopsis thaliana), 5'ss of exon 8
------GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaa-tgtctggatcttttttctgttcagttcttttcattttttcccgcattgaaggagaccactttattccaatatcagaaaatgctaggatgtcacttg-------
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CTTTACGTATGCTTATTTCAAGAAGCTGGATTACTTCTCCACTGAATgtaagtgtacaatcatcgattttttgtaggttttatctgttcctaagttatagtttcagccaatctctagttatttttatggcttattttttttttttgagtttgcag
upper sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G44270.1 (Arabidopsis thaliana), 5'ss of exon 7
GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaa-tgtctggatcttttttctgttcagttcttttcattttttcccgcattgaaggagaccactttattccaatatcagaaaatgctaggatgtcacttg-------
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GTATGCTTATTTCAAGAAGCTGGATTACTTCTCCACTGAATgtaagtgtacaatcatcgattttttgtaggttttatctgttcctaagttatagtttcagccaatctctagttatttttatggcttattttttttttttgagtttgcag
upper sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 7
--------------------------GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaa-tgtctggatcttttttctgttcagttcttttcattttttcccgcattgaaggagaccactttattccaatatcagaaaatgctaggatgtcacttg-
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CTGCAAAACCTTAACCGGATTTACACGTATGCATATTTCAAAAGGCTAGACTACTTTTCCACCGAATgtaagtgttcattttcctttactgttcaag-ctcttatcctattactaggttttattcttccgcttt-ttccttttggggtgggagttgttttcttgttcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88750729|gb|DY534870.1|DY534870EST: TCAAAAAGCTGGATTACTTTTCCACAGAAT CAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGA
genomic: TCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... tctttttcagCAGCCTTGGCTCAGTAGACGATGAATGTTGCAGGCCTAGAGCTATACTAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctggatcttttttctgttcagttcttttcattttttcccgcattgaaggagaccactttattccaatatcagaaaatgctaggatgtcacttg
- - - - - - - - AAGCTG
- - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaatg