1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agatttttaaaggagtgtttatgtggatgccaccataaggatatccttacgatgacatccttatgtttctttaaaacatttattagattctttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTATTGTCCAGAATTCTCTGTTTAAAGCTGGTGAGCGTGTGGCAATCGGAG
species | Zea mays |
transcript | GRMZM2G402242_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|37419554|gb|CF647460.1|CF647460
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|71447249|gb|DR828299.1|DR828299
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|71774415|gb|DR972293.1|DR972293
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|71770543|gb|DR968480.1|DR968480
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|91872707|gb|EB402664.1|EB402664
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|26558362|gb|CA830597.1|CA830597
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|87157289|gb|DY402078.1|DY402078
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|22472216|gb|BU036696.1|BU036696
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|91877955|gb|EB407912.1|EB407912
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|50323940|gb|CO519066.1|CO519066
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTEST: gi|50337086|gb|CO532212.1|CO532212
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
EST: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAG ATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
genomic: GGTGCGGCGAGAGGAAGGCCGCGCTGAAGCGGCCCAAAACCCTAGAACAGgtgcgcctgt ... tttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACT
cttacgatgacatccttatgtttctttaaaacatttattagattctttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTATTGTCCAGAATTCTCTGTTTAAAGCTGGTGAGCGTGTGGCAATCGGAG
tccttac putative branch site (score: 2)
ttctttctttt putative PPT
tttctttaaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatttttaaaggagtgtttatgtggatgccaccataaggatatccttacgatgacatccttatgtttctttaaaacatttattagattctttcttttagATCTGTAGGGAATGCTTCTATATCATCTTTGAGGACGAAATTCATCAAACTATTGTCCAGAATTCTCTGTTTAAAGCTGGTGAGCGTGTGGCAATCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - -tggatgc